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Jackson, D.C., A.V. Brown, and W.D. Davies.  1991.  Zooplankton transport and diel drift in the Jordan Dam tailwater during a minimum flow regime.  Rivers 2 (3): 190-197.

Jackson, R.I.  1950.  Variations in flow patterns at Hell’s Gate and their relationships to the migration of sockeye salmon.  International Pacific Salmon Fisheries Commission, Bulletin 3: 85-129.

Jackson, W., T. Martinez, P. Cuplin, and W. Minkley.  1987.  Assessment of water conditions and management opportunities in support of riparian values: BLM San Pedro River Properties...  Denver, CO: U.S. Bureau of Land Management (BLM-YA-PT-88).

Jager, H.I., and E. Pert.  1997.  Comment: testing the independence of microhabitat preferences and flow (part 2).  Transactions of the American Fisheries Society 126 (3): 537?]540.

Jager, H.I., D.L. DeAngelis, M.J. Sale, W. Van Winkle, D.D. Schmoyer, M.J. Sabo, D.J. Orth, and J.A. Lukas.  1993.  An individual-based model for smallmouth bass reproduction and young-of-year dynamics in streams.  Rivers 4 (2): 91-113.

Jager, H.I., H.E. Caldwell, M.J. Sale, M.S. Bevelhimer, C.C. Coutant, and W. van Winkle.  1997.  Modelling the linkages between flow management and salmon recruitment in streams.  Ecological Modelling 103: 171-191.

Jager, H.I., W. Van Winkle, and B.D. Holcomb.  1999.  Would hydrologic climate change in Sierra Nevada streams influence trout persistence?  Transactions of the American Fisheries Society 128 (2): 222-240.

Jakober, M.J.  1995.  Autumn and winter movement and habitat use of resident bull trout and westslope cutthroat trout in Montana.  M.Sc. thesis, Montana State University, Bozeman, Montana.

Jakober, M.I., T.E. McMahon, R.F. Thurow, and C.G. Clancy.  1997.  Role of stream ice on fall and winter movements and habitat use by bull trout and cutthroat trout in Montana headwater streams.  Transactions of the American Fisheries Society 127 (2): 223-235.

Jarrett, R.D.  1990.  Hydrologic and hydraulic research in mountain rivers.  Water Resources Bulletin 26: 419-429.

Jay, D.A., and C.A. Simenstad.  1996.  Downstream effects of water withdrawn in a small high-gradient basin: erosion and deposition on the Skokomish delta.  Estuaries 19: 501-517.

Jenkins, T.M., Jr.  1969.  Social structure, position choice and microdistribution of two trout species (Salmo trutta and S. gairdneri) resident in mountain streams.  Animal Behaviour Monographs 2: 56-123.

Jenkins, T.M., Jr., S. Diehl, K.W. Kratz, and S.D. Cooper.  Effects of population density on individual growth of brown trout in streams.  Ecology 80 (3): 941-956.

Jensen, A.J., and B.O. Johnsen.  1999.  The functional relationship between peak spring floods and survival and growth of juvenile Atlantic salmon (Salmo salar) and brown trout (Salmo trutta).  Functional Ecology 13: 778-785.

Jirka, K.J., and J. Homa, Jr.  1990.  Development and preliminary evaluation of suitability index curves for juvenile brook trout.  Rivers 1 (3): 207?]217.

Johnson, D.H.  1980.  The comparison of usage and availability measurements for evaluating resource preference.  Ecology 69: 125-134.

Johnson, I.W., C.R.N. Elliott, A. Gustard, and A.T. Newton.  1993.  River Allen instream flow requirements, pp. 5.15-5.21 in: Proceedings of British Hydrological Society Fourth National Hydrological Symposium, British Hydrological Society, Cardiff.

Johnson, I.W., C.R.N. Elliott, and A. Gustard.  1995.  Modeling the effect of groundwater abstraction on salmonid habitat availability in the River Allen, Dorset, England.  Regulated Rivers: Research & Management 10: 229-238.

Johnson, I.W., and F.M. Law.  1995.  Computer models for quantifying the hydro-ecology of British rivers.  J. CIWEM 9: 290-297.

Johnson, J.H., D.S. Dropkin, and P.G. Schaffer.  1992.  Habitat use by a headwater stream fish community in north-central Pennsylvania.  Rivers 3 (2): 69-79.

Johnson, J.H., and P.A. Kucera.  1985.  Summer-autumn habitat utilization of subyearling steelhead trout in tributaries of the Clearwater River, Idaho.  Canadian Journal of Zoology 63: 2283-2290.

Johnson, N.S., and R.M. Adams.  1988.  Benefits of increased streamflow: the case of the John Day River steelhead fishery.  Water Resources Research 24: 1839-1846.

Johnson, S.C., R. Burgess, and W. Kaemmerer.  1976.  Forest overstory vegetation and environment on the Missouri River floodplain in North Dakota.  Ecological Monographs 46 (1): 59-84.

Johnson, T.H.  1985.  Density of steelhead parr for mainstem rivers in western Washington during the low flow period, 1984.  Washington State Department of Game, Fishery Management Division 85?]6, Olympia.

Johnson, W.C.  1992.  Dams and riparian forests: case study from the upper Missouri River.  Rivers 3: 229-242.

Johnson, W.C.  1993.  Divergent response of riparian vegetation to flow regulation on the Missouri and Platte rivers.  U.S. National Biological Survey Biological Report 19: 426-431.

Johnson, W.C.  1994.  Woodland expansion in the Platte River, Nebraska: patterns and causes.  Ecological Monographs 64: 45-84.

Johnson, W.C.  1998.  Adjustment of riparian vegetation to river regulation in the Great Plains, USA.  Wetlands 18: 608-618.

Johnson, W.C., M.D. Dixon, R. Simons, S. Jenson, and K. Larson.  1995.  Mapping the response of riparian vegetation to possible flow reductions in the Snake River, Idaho.  Geomorphology 13: 159-173.

Johnston, T.A., M.N. Gaboury, R.A. Janusz, and L.R. Janusz.  1995.  Larval fish drift in the Valley River, Manitoba: Influence of abiotic and biotic factors and relationships with future year class strengths.  Canadian Journal of Fisheries and Aquatic Science 52: 2423-2431.

Johnston, J.W.  1986.  Environmental significance of instream flows.  St. Mary’s Law Review 17: 1297-1342.

Jones, D.R., J.W. Kiceniuk, and O.S. Bamford.  1974.  Evaluation of the swimming performance of several fish species from the Mackenzie River.  Journal of the Fisheries Research Board of Canada 31: 1641-1647.

Jones, J.A., and G.E. Grant.  1996.  Peak flow responses to clear-cutting and roads in small and large basin, western Cascades, Oregon.  Water Resour. Res. 32: 959-974.

Jones, WK., and W. Huang.  1996.  Modeling changing freshwater delivery to Apalachicola Bay, Florida.  Pp. 116-127 in: M.L. Spaulding and R.T. Cheng (editors) Estuarine and coastal modeling.  Proceedings of the 4th International Conference 1996.  American Society of Civil Engineering, New York.

Jonsson, N.  1991.  Influence of water flow, water temperature, and light on fish migration in rivers.  Nordic Journal of Freshwater Research 66: 20-35.

Jordan, T.E., D.L. Correll, J. Miklas and D.E. Weller.  1991.  Long-term trends in estuarine nutrients and chlorophyll, and short-term effects of variation in watershed discharge.  Marine Ecology Progress Series 75: 121-132.

Jowett, I.G.  1990.  Factors related to the distribution and abundance of brown and rainbow trout in New Zealand clear-water rivers.  New Zealand Journal of Marine and Freshwater Research 24: 429-440.

Jowett, I.G.  1992.  Models of the abundance of large brown trout in New Zealand rivers.  North American Journal of Fisheries Management 12 (3): 417-432.

Jowett, I.G.  1993.  A method for objectively identifying pool, run, and riffle habitats from physical measurements.  New Zealand Journal of Marine and Freshwater Research 27: 241-248.

Jowett, I.G.  1993.  Minimum flow assessments for instream habitat in Wellington rivers.  New Zealand Freshwater Miscellaneous Report No. 63.  National Institute of Water and Atmospheric Research, Chistchurch, p. 33.

Jowett, I.G.  1993.  Report of minimum instream flow requirements for instream habitat in Taranaki rivers.  New Zealand Freshwater Miscellaneous Report No. 75.  National Institute of Water and Atmospheric Research, Chistchurch, p. 35.

Jowett, I.G.  1995.  Spatial and temporal variability of brown trout abundance: a test of regression models.  Rivers 5 (1): 1-12.

Jowett, I.G.  1997.  Instream flow methods: a comparison of approaches.  Regulated Rivers: Research and Management 13 (2): 115-128.

Jowett, I.G.  1998.  Hydraulic geometry of New Zealand rivers and its use as a preliminary method of habitat assessment.  Regulated Rivers: Research and Management 14 (5): 451-.

Jowett, I.G., and M.J. Duncan.  1990.  Flow variability in New Zealand rivers and its relationship to in-stream habitat and biota.  New Zealand Journal of Marine and Freshwater Research 24: 305-317.

Jowett, I.G., and J. Richardson.  1989.  Effects of a severe flood on instream habitat and trout populations in seven New Zealand rivers.  New Zealand Journal of Marine and Freshwater Research 23: 11-17.

Jowett, I.G., and J. Richardson.  1990.  Microhabitat preferences of benthic invertebrates in a New Zealand river and the development of in-stream flow-habitat models for Deleatidium spp.  New Zealand Journal of Marine and Freshwater Research 24: 19-30.

Jowett, I.G., and J. Richardson.  1994.  Comparison of habitat use by fish in normal and flooded river conditions.  New Zealand Journal of Marine and Freshwater Research 28: 409-416.

Jowett, I.G., and J. Richardson.  1995.  Habitat preferences of common, riverine New Zealand native fishes and implications for flow management.  New Zealand Journal of Marine and Freshwater Research 29: 13-23.

Jowett, I.G., J. Richardson, B.J.F. Biggs, C.W. Hickey, and J.M. Quinn.  1991.  Microhabitat preferences of benthic invertebrates and the development of generalised Deleatidium spp. habitat suitability curves, applied to four New Zealand streams.  New Zealand Journal of Marine and Freshwater Research 25: 187-199.

June, J.A.  1981.  Life history and habitat utilization of cutthroat trout (Salmo clarki) in a headwater stream on the Olympic Peninsula, Washington.  M.S. thesis, University of Washington, Seattle.

Junk, W.J., P.B. Bayley, and R.E. Sparks.  1989.  The flood pulse concept in river floodplain systems.  Pp. 110-127 in: Dodge, D.P. (Ed.) Proceedings of the International Large Rivers Symposium.  Can. Special Publ. Fish. Aquatic Sciences 106.

Jurajda, P.  1995.  Effect of channelization and regulation on fish recruitment in a flood plain river.  Regulated Rivers: Research & Management 10: 207-215.

Jurajda, P.  1999.  Comparative nursery habitat use by 0+ fish in a modified lowland river.  Regulated Rivers: Research and Management 15: 113-124.


  
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